Publicacions en què col·labora amb JOSÉ LUTGARDO OLIVER JIMÉNEZ (27)

2022

  1. Decoding Gene Expression Signatures Underlying Vegetative to Inflorescence Meristem Transition in the Common Bean

    International Journal of Molecular Sciences, Vol. 23, Núm. 23

  2. Functional characterization of the tomato HAIRPLUS gene reveals the implication of the epigenome in the control of glandular trichome formation

    Horticulture Research, Vol. 9

2021

  1. geno5mC: A Database to Explore the Association between Genetic Variation (SNPs) and CpG Methylation in the Human Genome

    Journal of Molecular Biology, Vol. 433, Núm. 11

2020

  1. Transcriptional dynamics and candidate genes involved in pod maturation of common bean (Phaseolus vulgaris l.)

    Plants, Vol. 9, Núm. 4

2019

  1. SRNAbench and sRNAtoolbox 2019: intuitive fast small RNA profiling and differential expression

    Nucleic Acids Research, Vol. 47, Núm. W1, pp. W530-W535

2018

  1. Prediction of CpG Islands as an intrinsic clustering property found in many Eukaryotic DNA sequences and its relation to DNA methylation

    Methods in Molecular Biology (Humana Press Inc.), pp. 31-47

2017

  1. Error correction in methylation profiling from NGS bisulfite protocols

    Algorithms for Next-Generation Sequencing Data: Techniques, Approaches, and Applications (Springer International Publishing), pp. 167-183

  2. NGSmethDB 2017: Enhanced methylomes and differential methylation

    Nucleic Acids Research, Vol. 45, Núm. D1, pp. D97-D103

  3. sRNAtoolboxVM: Small RNA analysis in a virtual machine

    Methods in Molecular Biology (Humana Press Inc.), pp. 149-174

2015

  1. SRNAtoolbox: An integrated collection of small RNA research tools

    Nucleic Acids Research, Vol. 43, Núm. W1, pp. W467-W473

2014

  1. DNA clustering and genome complexity

    Computational Biology and Chemistry, Vol. 53, Núm. PA, pp. 71-78

  2. MethylExtract: High-Quality methylation maps and SNV calling from whole genome bisulfite sequencing data

    F1000Research, Vol. 2

  3. NGSmethDB: An updated genome resource for high quality, single-cytosine resolution methylomes

    Nucleic Acids Research, Vol. 42, Núm. D1

2013

  1. CpGislandEVO: A database and genome browser for comparative evolutionary genomics of CpG islands

    BioMed Research International, Vol. 2013

2012

  1. Clustering of DNA words and biological function: A proof of principle

    Journal of Theoretical Biology, Vol. 297, pp. 127-136

  2. Segmentation of time series with long-range fractal correlations

    European Physical Journal B, Vol. 85, Núm. 6

2011

  1. High-level organization of isochores into gigantic superstructures in the human genome

    Physical Review E - Statistical, Nonlinear, and Soft Matter Physics, Vol. 83, Núm. 3

  2. NGSmethDB: A database for next-generation sequencing single-cytosine- resolution DNAmethylation data

    Nucleic Acids Research, Vol. 39, Núm. SUPPL. 1

  3. WordCluster: Detecting clusters of DNA words and genomic elements

    Algorithms for Molecular Biology, Vol. 6, Núm. 1

2010

  1. Prediction of CpG-island function: CpG clustering vs. sliding-window methods

    BMC Genomics, Vol. 11, Núm. 1