Publications in collaboration with researchers from VU University Amsterdam (11)

2024

  1. Assessing the complementary information from an increased number of biologically relevant features in liquid biopsy-derived RNA-Seq data

    Heliyon, Vol. 10, Núm. 6

2023

  1. ALL-tRNAseq enables robust tRNA profiling in tissue samples

    Genes & development, Vol. 37, Núm. 5-6, pp. 243-257

  2. Comprehensive, integrative genomic analysis of microRNA expression profiles in different tissues of two wheat cultivars with different traits

    Functional and Integrative Genomics, Vol. 23, Núm. 1

  3. Genome-Wide Analysis of microRNA Expression Profile in Roots and Leaves of Three Wheat Cultivars under Water and Drought Conditions

    Biomolecules, Vol. 13, Núm. 3

  4. IsoSeek for unbiased and UMI-informed sequencing of miRNAs from low input samples at single-nucleotide resolution

    STAR Protocols, Vol. 4, Núm. 4

  5. NORMSEQ: A tool for evaluation, selection and visualization of RNA-Seq normalization methods

    Nucleic Acids Research, Vol. 51, Núm. W1, pp. W372-W378

  6. Reassessment of miRNA variant (isomiRs) composition by small RNA sequencing

    Cell Reports Methods, Vol. 3, Núm. 5

  7. sRNAtoolbox: Dockerized Analysis of Small RNA Sequencing Data in Model and Non-model Species

    Methods in molecular biology (Clifton, N.J.), Vol. 2630, pp. 179-213

2022

  1. Transcriptomic analysis of the tick midgut and salivary gland responses upon repeated blood-feeding on a vertebrate host

    Frontiers in Cellular and Infection Microbiology, Vol. 12

  2. sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms

    Nucleic Acids Research, Vol. 50, Núm. W1, pp. W710-W717

2021

  1. Extracellular vesicle miRNA predict FDG-PET status in patients with classical Hodgkin Lymphoma

    Journal of Extracellular Vesicles, Vol. 10, Núm. 9