Publicaciones en las que colabora con MICHAEL HACKENBERG (21)

2023

  1. ALL-tRNAseq enables robust tRNA profiling in tissue samples

    Genes & development, Vol. 37, Núm. 5-6, pp. 243-257

  2. Comprehensive, integrative genomic analysis of microRNA expression profiles in different tissues of two wheat cultivars with different traits

    Functional and Integrative Genomics, Vol. 23, Núm. 1

  3. Genome-Wide Analysis of microRNA Expression Profile in Roots and Leaves of Three Wheat Cultivars under Water and Drought Conditions

    Biomolecules, Vol. 13, Núm. 3

  4. IsoSeek for unbiased and UMI-informed sequencing of miRNAs from low input samples at single-nucleotide resolution

    STAR Protocols, Vol. 4, Núm. 4

  5. Reassessment of miRNA variant (isomiRs) composition by small RNA sequencing

    Cell Reports Methods, Vol. 3, Núm. 5

  6. isomiRdb: microRNA expression at isoform resolution

    Nucleic Acids Research, Vol. 51, Núm. 1 D, pp. D179-D185

  7. sRNAtoolbox: Dockerized Analysis of Small RNA Sequencing Data in Model and Non-model Species

    Methods in molecular biology (Clifton, N.J.), Vol. 2630, pp. 179-213

2022

  1. Functional Enrichment Analysis of Regulatory Elements

    Biomedicines, Vol. 10, Núm. 3

  2. MirGeneDB 2.1: toward a complete sampling of all major animal phyla

    Nucleic acids research, Vol. 50, Núm. D1, pp. D204-D210

  3. Quantitative proteomics analysis reveals core and variable tick salivary proteins at the tick-vertebrate host interface

    Molecular Ecology, Vol. 31, Núm. 15, pp. 4162-4175

  4. Transcriptomic analysis of the tick midgut and salivary gland responses upon repeated blood-feeding on a vertebrate host

    Frontiers in Cellular and Infection Microbiology, Vol. 12

  5. sRNAbench and sRNAtoolbox 2022 update: accurate miRNA and sncRNA profiling for model and non-model organisms

    Nucleic Acids Research, Vol. 50, Núm. W1, pp. W710-W717

2021

  1. Extracellular vesicle miRNA predict FDG-PET status in patients with classical Hodgkin Lymphoma

    Journal of Extracellular Vesicles, Vol. 10, Núm. 9

  2. In Silico Analysis of Micro-RNA Sequencing Data

    Methods in Molecular Biology (Humana Press Inc.), pp. 231-251

  3. geno5mC: A Database to Explore the Association between Genetic Variation (SNPs) and CpG Methylation in the Human Genome

    Journal of Molecular Biology, Vol. 433, Núm. 11

2020

  1. Erratum: MirGeneDB 2.0: The metazoan microRNA complement (Nucleic Acids Research (2019) DOI: 10.1093/nar/gkz885)

    Nucleic Acids Research

  2. MirGeneDB 2.0: The metazoan microRNA complement

    Nucleic Acids Research, Vol. 48, Núm. D1, pp. D132-D141

  3. Unification of miRNA and isomiR research: The mirGFF3 format and the mirtop API

    Bioinformatics, Vol. 36, Núm. 3, pp. 698-703

  4. mirnaQC: A webserver for comparative quality control of miRNA-seq data

    Nucleic Acids Research, Vol. 48, Núm. W1, pp. W262-W267

2019

  1. IiqDB: A small-RNAseq knowledge discovery database for liquid biopsy studies

    Nucleic Acids Research, Vol. 47, Núm. D1, pp. D113-D120